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Total lectures: 40
(Last updated Sun May 11 13:45:50 EDT 2008 )
-- 2008 (5) --
- Harvard-CMCD-20080505-Nets
- Quo Vadis Structural Biology: Networks, Variation, Flexibility (Networks Part)
- Quo Vadis, Boston, MA , 2008.05.05, 19:00-20:00 (Compact vers. of Networks Talk then Compact Motions Talk: Nets-Intro (w.o. names) + SIN + Disorder + Netpossel + CD4 + Net-Tools (tyna+coev) + Brief MolMovDB + HingeAtlas + FlexOracle + HingeMaster ; To get movies to work put contents of zipfile below into same directory as this ppt: http://lectures.gersteinlab.org/ppt/pfizer-motions-20061201/movies-put-in-same-dir-as-ppt.pfizer-motions-20061201.zip ; Everything fits within 50 min)
- Subject: motions,nets Date Given: 05/05/2008 Date Uploaded: 05/11/2008
- Harvard-CMCD-20080505-motions
- Quo Vadis Structural Biology: Networks, Variation, Flexibility (Motions Part)
- Quo Vadis, Boston, MA , 2008.05.05, 19:00-20:00 (Compact vers. of Networks Talk then Compact Motions Talk: Nets-Intro (w.o. names) + SIN + Disorder + Netpossel + CD4 + Net-Tools (tyna+coev) + Brief MolMovDB + HingeAtlas + FlexOracle + HingeMaster ; To get movies to work put contents of zipfile below into same directory as this ppt: http://lectures.gersteinlab.org/ppt/pfizer-motions-20061201/movies-put-in-same-dir-as-ppt.pfizer-motions-20061201.zip ; Everything fits within 50 min)
- Subject: networks,motions Date Given: 05/05/2008 Date Uploaded: 05/11/2008
- CMU-20080321-GenomeTechAnnotate
- Annotation of "Most" of the Human Genome: Focusing on the 99% in Non-coding Regions
- Joint CMU-Pitt Ph.D. Program in Computational Biology, Pittsburgh, PA ; Genome tech and Genome annotation talk, including: HMM segmentation; Cross-hyb. Corrections; DART TAR and TRE classification (w. deserts + biplot); pseudogene annotation (w. NRs) and integration with SDs, transcription and binding sites; and "what is a gene" summary. Fits into 60 min. w. fast presentation of pseudogenes and no NRs.
- Subject: GenomeTechAnnotate Date Given: 03/21/2008 Date Uploaded: 03/30/2008
- NSF-cdiwkshp1-20080311-textmine
- A Vision for Using All the Data and Publications from Science on Web: Mining this to Study the Structure of Science
- NSF Workshop on Knowledge Management and Visualization Tools ; 2008.03.11, 09:30-10:00 (Textmining talk, fits into ~30' w. interrupting questions)
- Subject: textmining Date Given: 03/11/2008 Date Uploaded: 03/17/2008
- UPenn-20080222-Nets
- Understanding Protein Function on a Genome-scale using Networks
- Penn Center for Bioinformatics; 2008.02.22, 6:00-17:00 (Normal vers. of Networks Talk: Funnygene+EdgeOnto+SIN+Bottlnecks+RegHierarchy+NetPosSel, fits within 50 min)
- Subject: networks Date Given: 02/22/2008 Date Uploaded: 02/24/2008
-- 2007 (19) --
- NIDA-svisit-20071219-PARE
- Relating Protein Abundance & mRNA Expression
- Yale (Comp. Bio. & Bioinformatics) NIDA site visit at Yale
- Subject: protvsmrna Date Given: 12/19/2007 Date Uploaded: 12/24/2007
- AACR-20071102-GenomeAnnotation
- Annotation of the Human Genome: Focusing on Intergenic Regions and Non-coding RNAs
- AACR conference on The Role of Non-Coding RNAs in Cancer, Boston, MA 2007.11.02, 11:15-11:45 (Genome annotation talk with core pseudogene analysis + NR close-up. Then inter-relating pseudogenes with tiling-derived transcription. Everything fits into ~25 min, with a bit of a rush through TAR sect.)
- Subject: GenomeAnnotation, pseudogenes Date Given: 11/02/2007 Date Uploaded: 11/04/2007
- PittDiffSoc-20071026-motions
- Computational Proteomics: Studying Protein Motions from a Database Perspective
- 65th Pittsburgh Diffraction Conference, Buffalo, NY 2007.10.26, 11:00 – 11:45 (Std. Motions Talk with FlexOracle, HingeAtlas, Helix, NMA; Fits into allocated time. To get movies to work put contents of zipfile below into same directory as this ppt: http://lectures.gersteinlab.org/ppt/pfizer-motions-20061201/movies-put-in-same-dir-as-ppt.pfizer-motions-20061201.zip)
- Subject: motions Date Given: 10/26/2007 Date Uploaded: 10/27/2007
- Yale-cegs-overview-20071010
- Yale CEGS: Integrated Technologies for Analyzing the Human Genome
- NHGRI CEGS meeting 2007.10.10, 11:30-11:55 (Summary of Yale CEGS center at NHGRI CEGS mtg. Focuses on Breakpt, uniarray, & PEM. Everything fits into ~25 min.)
- Subject: Date Given: 10/10/2007 Date Uploaded: 10/15/2007
- MSCBB-20071006-Nets
- Understanding Protein Function on a Genome-scale using Networks
- MSCBB - Chicago 2007.10.06, 15:50-16:35 (Compact vers. of Networks Talk: EdgeOnto+SIN+Bottlnecks+RegHierarchy, fits with rush into allocated time)
- Subject: Date Given: 10/06/2007 Date Uploaded: 10/20/2007
- UPenn-20070927-GenomeAnnotation-w-Bkptr-UniArray
- Annotation of Intergenic Regions of the Human Genome
- UPenn, Biochem. & Biophys. 2007.09.27, 12:00-13:00 (Genome annotation talk with core pseudogene analysis and then inter-relating pseudogenes with tiling-derived transcription and CNVs. In detail presentation of tiling technology with BreakPtr & Universal Array. Everything fits into ~50 min.)
- Subject: Date Given: 09/27/2007 Date Uploaded: 10/15/2007
- TenMinute-LabOverview-20070907
- Ten Minute Overview of the Lab
- Ten minute overview of the lab presented at the annual CBB retreat
- Subject: overview Date Given: 09/07/2007 Date Uploaded: 09/16/2007
- DESRES-20070810-Nets-Motions
- Proteomics: Networks and Motions
- D E Shaw Research 2007.08.10, 11:30-12:30. Two ppt in total with movies, make sure movies are put into same directory as ppts. See files in "extra" directory. Networks Part: Compact vers. of Networks Talk -- SIN+Bottlnecks+RegHierarchy, fit with rush into allocated time. Motions Part: Compact vers. of Motions Talk -- volumes+helix but no NMA, only a little HAG.
- Subject: networks, motions Date Given: 08/10/2007 Date Uploaded: 08/23/2007
- ECB2007-MIT-20070806-Nets
- Understanding Protein Function on a Genome-scale using Networks
- Engineering Cell Biology - The Cell in Context, MIT 2007.08.06, 5:05-15:40 (Compact vers. of Networks Talk: EdgeOnto+SIN+Bottlnecks+RegHierarchy, fit with rush into allocated time)
- Subject: networks Date Given: 08/06/2007 Date Uploaded: 08/08/2007
- ProtSoc-20070724-GenomeAnnotation
- Annotation of Intergenic Regions of the Human Genome, Focusing on Protein Fossils
- Protein Society, Boston, MA 2007.07.24, 8:05-8:45 (Genome Annotation Talk with core pseudogenes, DART, binding sites, and pgene-transcription, No Tilescope. Everything except DART and binding sites fit into 37 minutes.)
- Subject: pseudogenes, GenomeAnnotation Date Given: 07/24/2007 Date Uploaded: 07/28/2007
- EBI-20070709-Nets
- Understanding Protein Function on a Genome-scale using Networks
- EBI, Cambridge, UK, 2007.07.09, 13:30-14:30(Extended vers. of Networks Talk: EdgeOnto+SIN+Bottlnecks+RegHierarchy+NetPosSel+Motifs+tYNA+RNAi)
- Subject: Networks Date Given: 07/09/2007 Date Uploaded: 07/09/2007
- MRC-CAM-20070707-GenomeAnnotation
- Annotation of Intergenic Regions of the Human Genome, Focusing on Protein Fossils
- Proteins, Genomes, and Evolution, Cambridge, UK 2007.07.07, 11:00-11:30 (Genome Annotation Talk with core pseudogenes, DART, binding sites, and pgene-transcription, No Tilescope. All completed comfortably within time.)
- Subject: GenomeAnnotation Date Given: 07/07/2007 Date Uploaded: 07/24/2007
- cpi07-20070618-GenomeAnnotation
- Annotation of Intergenic Regions of the Human Genome, Focusing on Protein Fossils
- CPI 2007, Ottawa, Canada; 2007.06.18, 11:15-12:00 (Genome Annotation Talk with core pseudogenes, DART, binding sites, and pgene-transcription, No Tilescope. All completed comfortably within time at 44' exact.)
- Subject: pseudogenes,GenomeAnnotation Date Given: 06/18/2007 Date Uploaded: 06/26/2007
- Cistrome07-20070531-GenomeAnnotation
- Annotation of Intergenic Regions of the Human Genome
- Cistrome 2007, Boston, MA ; 2007.04.30, 15:20-15:55 (Genome Annotation Talk without much pgenes, including Tilescope, HMMs, DART, binding sites, and pgene-transcription, All completed comfortably within time.)
- Subject: GenomeAnnotation Date Given: 05/31/2007 Date Uploaded: 06/27/2007
- NetSci2007-20070524-Nets
- Understanding Protein Function on a Genome-scale using Networks
- NetSci 2007, NYC; 2007.05.25, 09:25-10:00 (Compact vers. of Networks Talk: SIN+Bottlnecks+RegHierarchy+RNAi)
- Subject: networks Date Given: 05/24/2007 Date Uploaded: 06/02/2007
- modencode-gt-snippet-for-cshl-mtg
- Gerstein Lab Aims in ModENCODE
- Snippet for presentation at CSHL modENCODE meeting describing GersteinLab aims in Transcript Grant
- Subject: other Date Given: 05/08/2007 Date Uploaded: 05/20/2007
- Brown-CompBio-20070502-Nets
- Understanding Protein Function on a Genome-scale using Networks
- Brown Comp. Bio; 2007.05.02, 16:00-17:00 (Very full version of Nets talk, incl. bottlenecks and funcsim. Overall, ~60' leaving out motifs (Yu et al., GenomeBiology) + most dynamics (Luscombe et al.))
- Subject: networks Date Given: 05/02/2007 Date Uploaded: 05/20/2007
- McGill-CompBio-20070430-Genome-Annotation
- Annotation of Intergenic Regions of the Human Genome
- McGill University, Comp. Bio. 2007.04.30, 12:00-13:30 (Full but raw version of genome annotation talk, incl. updates pgenes with ENCODE & tilescope. Uploaded version incl. ink annotation.)
- Subject: pseudogenes,GenomeAnnotation Date Given: 04/30/2007 Date Uploaded: 05/20/2007
- mskcc-20070215
- Understanding Protein Function on a Genome-scale using Networks
- Networks talk now including Bottlenecks and Functional Similarity Metric
- Subject: networks Date Given: 02/15/2007 Date Uploaded: 02/19/2007
-- 2006 (13) --
- recomb06-20061202
- Understanding Protein Function on a Genome-scale using Networks
- Recomb 2006 Satellite Conferences on: Systems Biology & Computational Proteomics 2006.12.02, 09:15-10:00
- Subject: networks Date Given: 12/02/2006 Date Uploaded: 12/04/2006
- pfizer-motions-20061201
- Computational Proteomics: Studying Protein Motions from a Database Perspective
- Pfizer Research, La Jolla; 2006.12.01, 14:30 - 15:30
- Subject: motions Date Given: 12/01/2006 Date Uploaded: 12/26/2006
- orfeome06-20061116
- Understanding Protein Function on a Genome-scale using Networks
- 3-D Structural Analysis of Protein Interaction Networks Gives New Insight Into Protein Function, Network Topology and Evolution + Genomic analysis of the hierarchical structure of regulatory networks
- Subject: networks Date Given: 11/16/2006 Date Uploaded: 11/17/2006
- Ottawa-motions-20061023
- Computational Proteomics: Networks and Structures
- Subject: motions Date Given: 10/23/2006 Date Uploaded: 11/14/2006
- nyu-networks-20060918
- Computational Proteomics: Networks and Structures
- Just networks part of talk
- Subject: networks Date Given: 09/18/2006 Date Uploaded: 11/14/2006
- DREAM-conf-Wavehill-20060908
- Understanding Biological Function through Evaluation of Genome-scale Networks
- Subject: networks Date Given: 09/08/2006 Date Uploaded: 09/25/2006
- Yeast-Meet-20060729
- Structured Abstracts of Yeast Literature: A Proposal to Stimulate Discussion
- Mark B Gerstein Michael Seringhaus Dov Greenbaum Yale Yeast Meeting 2006 2006.07.29, 8' in 16:30-18:30
- Subject: other, epublishing Date Given: 07/29/2006 Date Uploaded: 07/30/2006
- encode-pgenes-20060705
- Pseudogenes in the ENCODE Regions: Consensus Annotation, Analysis of Transcription and Evolution
- Deyou Zheng, Adam Frankish, Robert Baertsch, Philipp Kapranov, Alexandre Reymond, Siew Woh Choo, Yontao Lu, France Denoeud, Stylianos Antonarakis, Michael Snyder, Yijun Ruan, Chia-Lin Wei, Thomas Gingeras, Roderic Guigo, Jennifer Harrow, Mark Gerstein Yale, Sanger, UCSC, GIS, AFFX, U Geneva, IMIM a GT effort with great thanks to MSA, VAR , TR Talk at ENCODE 2006,07.05 12' in 20:30-21:30
- Subject: pseudogenes Date Given: 07/05/2006 Date Uploaded: 07/04/2006
- encode-pgenes-20060705-old
- Pseudogenes in the ENCODE Regions: Consensus Annotation, Analysis of Transcription and Evolution
- Deyou Zheng, Adam Frankish, Robert Baertsch, Philipp Kapranov, Alexandre Reymond, Siew Woh Choo, Yontao Lu, France Denoeud, Stylianos Antonarakis, Michael Snyder, Yijun Ruan, Chia-Lin Wei, Thomas Gingeras, Roderic Guigo, Jennifer Harrow, Mark Gerstein Yale, Sanger, UCSC, GIS, AFFX, U Geneva, IMIM a GT effort with great thanks to MSA, VAR , TR Talk at ENCODE 2006,07.05 12' in 20:30-21:30
- Subject: pseudogenes Date Given: 07/05/2006 Date Uploaded: 07/04/2006
- dimacs-prot-func-20060505
- Using Molecular Networks to Understand Protein Function on a Genome Scale
- Mark B Gerstein Yale (Comp. Bio. & Bioinformatics) DIMACS Workshop on Sequence, Structure and Systems Approaches to Predict Protein Function
- Subject: networks Date Given: 05/05/2006 Date Uploaded: 05/20/2006
- A2K-at-Yale-20060422
- Access to Scientific Knowledge (A2sciK) - Practical Issues Relating to it for Scientists
- Mark B Gerstein Yale (CBB, MBB, CS) A2K at Yale Law 2006.04.22, 15' in 11:15-13:00
- Subject: other, epublishing Date Given: 04/22/2006 Date Uploaded: 04/24/2006
- Dream-wkshp-20060310
- Can we find reasonable metrics to evaluate the reconstructed networks of in-silico generated data of known topology?
- Mark B Gerstein Yale U Talk at DREAM workshop 2006,03.10 -- 16:15-16:40
- Subject: networks Date Given: 03/10/2006 Date Uploaded: 03/12/2006
- nyas-20060126
- Annotation of Intergenic Regions of the Human Genome, focusing on Pseudogenes
- Mark B Gerstein Yale U Talk at NYAS 2006,01.26 18:20 - 19:00
- Subject: pseudogenes Date Given: 01/26/2006 Date Uploaded: 01/26/2006
-- 2005 (2) --
- princeton-cs-20050928
- Annotation of Intergenic Regions of the Human Genome, focusing on Pseudogenes
- Mark B Gerstein Yale U Talk at Princeton CS
- Subject: pseudogenes Date Given: 09/28/2005 Date Uploaded: 10/05/2005
- aaas-20050219
- Putting It All Together: Integrating the Data (using molecular networks)
- Mark B Gerstein Yale U Talk at AAAS 2005.02.18
- Subject: Date Given: 02/19/2005 Date Uploaded: 03/04/2005
-- 2004 (1) --
- dc-expbio-20040417
- Towards Protein Function: Relating mRNA Expression, Protein Abundance, and Protein-protein Interactions
- Talk at Experimental Biology 2004
- Subject: pare Date Given: 04/17/2004 Date Uploaded: 12/13/2007